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VarSome Help Center
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Manual
  • Manual
    • Sample Management
    • Analyses
    • Results
    • Filters
    • Reporting
    • Quality Control
    • Legal
  • Germline Variant Classification
    • General
    • Variant Interpretation
  • FAQ
    • Filters
    • General
    • User Interface
    • Pipelines
    • In silico algorithms
    • Troubleshooting
  • Pricing
  • Features in development
  • For Partners
  • VarSome API
  • ClinVar
  • Features
      Back to home
      1. VarSome Help Center
      2. Manual
      • Manual
        • Sample Management
        • Analyses
        • Results
        • Filters
        • Reporting
        • Quality Control
        • Legal
      • Germline Variant Classification
        • General
        • Variant Interpretation
      • FAQ
        • Filters
        • General
        • User Interface
        • Pipelines
        • In silico algorithms
        • Troubleshooting
      • Pricing
      • Features in development
      • For Partners
      • VarSome API
      • ClinVar
      • Features

      Manual

      Step-by-step instructions for VarSome Clinical and description of all its features.
      • Publications related to variants
      • Introduction
      • Device description

      Sample Management

      • Data Upload
      • Sample tags
      • Illumina BaseSpace Integration

      Analyses

      • CNV/SV annotation (from VCF)
      • CNV/SV analysis sensitive mode
      • Analysis Tokens
      • Accepted input files
      • Requirements for submitted VCF files
      • Launch new analysis
      • Launching sub-analysis
      • Merging analyses
      • Custom transcript for annotation
      • CNV calling analysis
      See more

      Results

      • How can I inspect my analysis results on more than one monitors?
      • Dashboard
      • Variant table
      • Analysis Actions menu
      • Custom Variant Classifications
      • Import of classifications and comments
      • Sample cross-referencing
      • Phenotype Matching
      • CNV visualization
      • Sample View
      See more

      Filters

      • Dynamic filters
      • Filter sets
      • Gene lists
      • Algorithmic filters
      • Segregating variants analysis
      See more

      Reporting

      • Variant Selection
      • Report Template Setup
      • Clinical Report Generation
      • Report files to download
      • Coverage report for captured regions
      • Region list coverage report
      See more

      Quality Control

      • User Messages - FASTQ and alignment QC
      • Quality Control Report
      • FastQC Report
      • Audit Trail

      Legal

      • Annex I – ISO 13485
      • Annex II – CE-IVD Declaration of conformity
      • Annex III - HIPAA Compliance Statement
      • Annex IV - IVD Italy
      • Annex V - Hébergeur de Données de Santé (HDS)
      • Annex VI - ISO 27001
      • Annex VII - STAR Registry Listing for VarSome Clinical
      • Annex VIII - AgID Italy
      See more
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      VarSome Help Center
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