From the Variant Table page at the “Analysis actions” drop-down menu you can download any of the following files:
- FastQC report: A quality control report for high throughput sequence data. It can be viewed from “Analyses actions”
- QC report: A quality control report with information about the Sequence technology, Read alignment results, Regions reported, Coverage, Number of identified variants by class, Summary for ACMG Rules and Number of SNV found in coding regions. You can download the QC report in PDF or Word format.
- Coding coverage report: Excel document containing details of the coverage of the coding regions included in the analysed gene list.
- Coverage report for captured regions: Excel document containing details of the coverage of the assay’s target regions.
- Region list coverage report: Excel document containing details of the coverage of public/custom defined regions.
You could also download several files for further exploration like:
- VCF File: A compressed (*.vcf.gz) vcf file with all annotated variants of the analysis.
- BAM File: The bam file (the sample’s reads aligned against the reference genome) used in the analysis.
- BAI File: The index file for the above BAM file.