How can I check the quality/average coverage etc of my input sample?

After you have run an analysis, at the Dashboard page you can click on the icon and find the “View QC report”.  Also, at the Variant Table page, you can choose from the “Analysis actions” options the “View QC report”.

You will be directed to the “Quality control report” page, with information about the Sequence technology, Read alignment results, Regions reported, Coverage, Number of identified variants by class, Summary for ACMG Rules and Number of SNV found in coding regions. You can download the QC report in PDF or Word format.